Temperature control is a critical factor in PCR for efficient DNA amplification. The main aim is to achieve tight control and high rate of heating and cooling for a portable, cost-effective PCR device. This speed depends on reduction of the thermal mass of the PCR heating part. The common methods used to decrease the device's thermal mass or heating/cooling time are to improve desirable device structural design and to choose a better heating and cooling mechanism with robust controller. Increasing the thermal mass provides a good temperature distribution on the heater surface, but it delays the heat transfer. Therefore, removing thermal mass makes the controller struggle to provide a high temperature uniformity distribution on Peltier surface. In this paper, we provide a cost-effective PCR heating/cooling system using Peltier element. This system is controlled using adaptive FLC with bang-bang as a hybrid